species:   Scscl
pid:       PID1705
parent:    Ssc-milR-181
paralog:   
locus:     NW_001820832.1:1559730-1559826
matures:   ['UUUAAGGACGACUUUUCUUGAA', 'AAGAAAAAAAGUUAUUGAACG']
srr:       SRR12527899
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527899.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527899.cram NW_001820832.1:1559730-1559826

19 out of bounds
24 alignments
5 proper strand
5 stranded perfect matches

         ************************                               *************************        
AGUGAAGGGACUCAAGAAAAAAAGUUAUUGAACGCCGUGGAUCGUGUUAUUGAGAAUUCACCUAUUUUAAGGACGACUUUUCUUGAAGUUCAAGACC
.((....(((((((((((((...(((.(((((....((((((..(.......)..))))))....))))).)))...)))))))).)))))...)).
-----------------------------------------------------------------UUUAAGGACGACUUUUCUUGAA---------- l=22 a=0 c
-------------AAGAAAAAAAGUUAUUGAACG--------------------------------------------------------------- l=21 a=0 c*
------------------------------------------------------------------UUAAGGACGACUUUUCUUGAAGU-------- l=23 a=1 ma
-----------UCAAGAAAAAAAGUUAUUGAAC---------------------------------------------------------------- l=22 a=0 ma*

------------------------------------------------------------------UUAAGGACGACUUUUCUUGAAGU-------- l=23 a=1 (ma)
-----------------------------------------------------------------UUUAAGGACGACUUUUCUUGAAG--------- l=23 a=1 
-------------------------------------------------UUGAGAAUUCACCUAUUUUAAG-------------------------- l=22 a=1 
-----------------------------------------UCGUGUUAUUGAGAAUUCACCU---------------------------------- l=22 a=1 
--UGAAGGGACUCAAGAAAAAAAGU------------------------------------------------------------------------ l=23 a=1 

mb-01111
ax-1001011
ku-01
ss-110110001100
fn-101
